PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0740s0040.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 224aa    MW: 25486.8 Da    PI: 8.9621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0740s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.26e-3157754128
                     NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +ekewyfF++rd+ky++g+r+nra+ +gyWkatg dk++ +   ++vg+kk Lvfy g+apkgekt+W+mheyrl
  SapurV1A.0740s0040.2.p   5 GEKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIGQ--PKTVGIKKALVFYAGKAPKGEKTNWIMHEYRL 77 
                             579************************************98..778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.4821103IPR003441NAC domain
SuperFamilySSF1019411.57E-353103IPR003441NAC domain
PfamPF023652.4E-15977IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALYGEKEWY FFTPRDRKYP NGSRPNRAAG RGYWKATGAD KPIGQPKTVG IKKALVFYAG  60
KAPKGEKTNW IMHEYRLAEV DRSVRKKNSL RLDDWVLCRI HNKKGTIERQ GQHLSVKKAN  120
STEIVEEDEK KSVVMLPPPP APSSATGTVN DYVYFDTSDS VPRLHTDSSC SEHVVSPEFT  180
CEVQSNPYNY LDATMDIPFT SQFQGDYQMS PLQDMFMYLQ KPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49210964174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2279790.0CU227979.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307447.11e-162no apical meristem family protein
SwissprotQ390131e-105NAC2_ARATH; NAC domain-containing protein 2
TrEMBLB9H7H21e-162B9H7H2_POPTR; No apical meristem family protein
STRINGPOPTR_0005s20240.11e-161(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-102NAC family protein